PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G01100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 236aa    MW: 25607 Da    PI: 4.9237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G01100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1170117454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRdr+N++f eL +++ ++   ++ Kl+Ka iL  A + + +L
  OGLUM02G01100.1  70 SKACREKIRRDRLNDRFLELSSVINPD---KQAKLDKANILSDAARLLAEL 117
                      6789***********************...**************9887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1359133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.25266117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-869122No hitNo description
PfamPF000107.0E-970117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1271139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-772123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR  60
DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK LDKANILSDA ARLLAELRGE  120
AEKLKESNEK LRETIKDLKV EKNELRDEKV TLKAEKERLE QQVKALSVAP TGFIPHLPHP  180
AAFHPAAFPP FIPPYQALGN KNAPTPAAFQ GMAMWQWLPP TAVDTTQDPK LWPPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608810.0AK060881.1 Oryza sativa Japonica Group cDNA clone:001-035-A10, full insert sequence.
GenBankAK1034340.0AK103434.1 Oryza sativa Japonica Group cDNA clone:J033129B02, full insert sequence.
GenBankAK1041880.0AK104188.1 Oryza sativa Japonica Group cDNA clone:006-303-B03, full insert sequence.
GenBankEU8372630.0EU837263.1 Oryza sativa Japonica Group clone KCS043C03 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626366.11e-173PREDICTED: transcription factor ILR3
SwissprotQ9FH373e-55ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D9YLC11e-173A0A0D9YLC1_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g02480.11e-172(Oryza sativa Japonica Group)
STRINGBGIOSGA007247-PA1e-172(Oryza sativa Indica Group)
STRINGORGLA02G0011200.11e-172(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-41bHLH family protein